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April 18, 2015

SourceTracker version 1.0 is now released, and SourceTracker has been moved to


This version now outputs full source predictions for every bug in every source environment. These are saved in a subfolder called "full_results".


Future releases of SourceTracker...

April 18, 2015


Our recent paper on infant fungal microbiomes with Cheryl Gale and Mike Sadowsky's groups is featured on the MSI home page.

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March 25, 2016

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Immigrant Microbiome paper published in Cell

November 9, 2018

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Knights Lab

MCB 6-124

420 Washington Ave SE

Minneapolis, MN 55455

(612) 5-MICROB (612-564-2762)



Dr. Dan Knights is an Associate Professor in the Department of Computer Science and Engineering and the Biotechnology Institute at the University of Minnesota. The Knights lab models host-microbiome interactions in human disease, with labs in Minneapolis and Saint Paul. Knights is a PI with the Minnesota Supercomputing Institute.

© 2013-2014 Knights Lab, University of Minnesota