Published data sets.
Raw and processed benchmark data, including metadata, from the Knights 2011 FEMS paper, "Supervised Classification of Human Microbiota" are available here.
Data used in SourceTracker publication, Knights et al. Nature Methods 2011, "Bayesian Community-Wide Culture-Independent Microbial Source Tracking" are available here.
Final data used in Koren et al. 2013, "A Guide to Enterotypes accross the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets" are here.
Host Genetics and the Microbiome in IBD
Final data analyzed in Knights et al. 2014, "Complex Host Genetics Influence the Microbiome in Inflammatory Bowel Disease" are here.
Predicting Chemotherapy-related Infection
Publication data used in Montassier et al. 2016, "Pretreatment Gut Microbiome Predicts Chemotherapy-related Infection" are here.